JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFCP2L1_chr2_121211587_121290202	0/0	t0047	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0048	7844	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0049	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0050	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0051	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0052	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0053	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0054	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0055	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0056	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0057	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0058	7848	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0059	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0060	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0061	7848	1	0	0	0	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0062	7848	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0063	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0064	7849	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0065	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0066	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0067	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0068	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0069	7849	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0070	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0071	7848	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0072	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0073	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0074	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0075	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0076	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0077	7844	1	0	1	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0078	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0079	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0080	7844	1	0	0	1	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0081	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0082	7846	1	0	0	0	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0083	7846	1	0	0	0	0	1	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2L1_chr2_121211587_121290202	0/0	t0084	7848	1	1	0	0	0	0	copy fasta	TFCP2L1	chr2	121211587	121290202
TFCP2_chr12_51088656_51178135	0/0	t0001	2283	67	4	10	44	2	7	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0002	2297	46	4	11	23	2	6	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0003	2297	45	4	11	29	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0004	2297	41	14	17	0	5	5	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0005	2291	22	0	10	10	0	2	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0006	2303	16	10	1	0	0	5	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0007	2283	14	14	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0008	2295	9	9	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0009	2285	6	4	0	2	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	1/0	t0010	2299	6	5	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0011	2299	5	0	0	5	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0012	2297	4	0	0	3	1	0	copy fasta	TFCP2	chr12	51088656	51178135