JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFCP2_chr12_51088656_51178135	0/0	t0013	2297	4	1	3	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0014	2297	4	4	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0015	2299	3	0	0	3	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0016	2291	3	0	0	3	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0017	2297	3	0	0	3	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0018	2293	3	0	1	1	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0019	2287	3	3	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0020	2303	3	3	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0021	2299	3	3	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0022	2297	3	1	2	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0023	2299	2	0	0	1	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0024	2297	2	0	0	0	0	2	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0025	2303	2	0	0	0	1	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0026	2297	2	1	1	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0027	2291	2	0	0	0	0	2	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0028	2299	2	0	0	1	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0029	2299	2	1	1	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0030	2285	2	0	0	0	0	2	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/1	t0031	2299	2	0	0	0	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0032	2297	2	0	2	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0033	2283	1	0	0	1	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0034	2267	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0035	2293	1	0	0	1	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0036	2283	1	0	1	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0037	2295	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0038	2297	1	0	0	0	0	1	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0039	2295	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0040	2303	1	0	0	1	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0041	2299	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0042	2283	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0043	2295	1	0	0	0	1	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0044	2297	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0045	2301	1	0	0	1	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0046	2267	1	1	0	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFCP2_chr12_51088656_51178135	0/0	t0047	2283	1	0	1	0	0	0	copy fasta	TFCP2	chr12	51088656	51178135
TFDP1_chr13_113579753_113646473	1/1	t0001	1407	329	86	61	130	13	37	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0002	1407	6	0	2	0	1	3	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0003	1407	4	4	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0004	1407	3	0	2	1	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0005	1407	1	0	0	1	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0006	1407	1	0	1	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0007	1407	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0008	1407	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0009	1407	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP1_chr13_113579753_113646473	0/0	t0010	1417	1	1	0	0	0	0	copy fasta	TFDP1	chr13	113579753	113646473
TFDP2_chr3_141939428_142154544	0/0	t0001	8543	16	0	4	12	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	1/0	t0002	8540	13	0	4	3	1	4	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/1	t0003	8544	12	4	1	5	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0004	8543	7	5	0	0	0	2	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0005	8544	6	0	0	5	1	0	copy fasta	TFDP2	chr3	141939428	142154544