JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFDP2_chr3_141939428_142154544	0/0	t0006	8542	6	0	1	5	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0007	8544	5	0	3	2	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0008	8543	5	1	3	0	1	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0009	8545	4	1	0	2	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0010	8541	4	0	2	2	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0011	8542	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0012	8544	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0013	8541	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0014	8545	3	0	0	3	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0015	8547	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0016	8544	3	0	3	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0017	8543	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0018	8542	3	3	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0019	8540	3	0	0	3	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0020	8540	3	0	1	0	2	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0021	8541	2	0	1	0	1	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0022	8543	2	0	2	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0023	8541	2	2	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0024	8545	2	0	0	1	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0025	8544	2	1	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0026	8544	2	0	0	2	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0027	8543	2	2	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0028	8543	2	2	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0029	8542	2	0	1	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0030	8542	2	2	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0031	8537	2	0	1	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0032	8541	2	0	0	2	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0033	8541	2	0	0	1	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0034	8542	2	0	0	2	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0035	8537	2	0	0	1	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0036	8547	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0037	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0038	8546	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0039	8540	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0040	8543	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0041	8545	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0042	8543	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0043	8544	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0044	8545	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0045	8545	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0046	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0047	8544	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0048	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0049	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0050	8546	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0051	8546	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0052	8545	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0053	8546	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0054	8541	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0055	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544