JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFDP2_chr3_141939428_142154544	0/0	t0056	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0057	8548	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0058	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0059	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0060	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0061	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0062	8547	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0063	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0064	8546	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0065	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0066	8545	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0067	8545	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0068	8545	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0069	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0070	8546	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0071	8547	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0072	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0073	8544	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0074	8550	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0075	8546	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0076	8545	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0077	8544	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0078	8543	1	0	0	0	1	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0079	8544	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0080	8543	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0081	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0082	8545	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0083	8546	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0084	8534	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0085	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0086	8549	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0087	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0088	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0089	8542	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0090	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0091	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0092	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0093	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0094	8544	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0095	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0096	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0097	8546	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0098	8547	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0099	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0100	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0101	8546	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0102	8543	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0103	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0104	8543	1	0	0	0	1	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0105	8541	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544