JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFDP2_chr3_141939428_142154544	0/0	t0106	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0107	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0108	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0109	8536	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0110	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0111	8541	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0112	8541	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0113	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0114	8543	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0115	8542	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0116	8545	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0117	8541	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0118	8540	1	0	0	0	0	1	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0119	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0120	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0121	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0122	8539	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0123	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0124	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0125	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0126	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0127	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0128	8536	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0129	8537	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0130	8538	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0131	8540	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0132	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0133	8540	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0134	8541	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0135	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0136	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0137	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0138	8542	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0139	8543	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0140	8544	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0141	8544	1	0	1	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0142	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0143	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0144	8544	1	1	0	0	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0145	8545	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0146	8548	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0147	8549	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0148	8539	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP2_chr3_141939428_142154544	0/0	t0149	8543	1	0	0	1	0	0	copy fasta	TFDP2	chr3	141939428	142154544
TFDP3_chrX_133211662_133223354	1/1	t0001	476	93	22	26	30	4	9	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0002	472	83	16	12	42	3	10	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0003	471	36	0	4	30	2	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0004	490	16	5	5	4	0	2	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0005	474	9	9	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0006	470	5	4	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354