JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFDP3_chrX_133211662_133223354	0/0	t0007	475	4	2	0	1	0	1	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0008	504	4	2	0	1	0	1	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0009	474	2	2	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0010	473	1	1	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0011	468	1	0	0	1	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0012	475	1	0	0	0	0	1	copy fasta	TFDP3	chrX	133211662	133223354
TFDP3_chrX_133211662_133223354	0/0	t0013	488	1	1	0	0	0	0	copy fasta	TFDP3	chrX	133211662	133223354
TFE3_chrX_49023726_49048357	0/1	t0001	1564	196	25	42	90	9	29	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	1/0	t0002	1564	56	47	8	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0003	1564	2	2	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0004	1564	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0005	1563	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0006	1563	1	0	0	0	0	1	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0007	1565	1	1	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0008	1564	1	1	0	0	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFE3_chrX_49023726_49048357	0/0	t0009	1566	1	0	0	1	0	0	copy fasta	TFE3	chrX	49023726	49048357
TFEB_chr6_41678978_41740608	1/0	t0001	903	277	71	51	107	12	35	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/1	t0002	903	96	14	18	51	2	10	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0003	903	19	2	7	10	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0004	903	3	0	3	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0005	903	2	2	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0006	903	2	0	0	2	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0007	903	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0008	903	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0009	903	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0010	903	1	0	1	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0011	903	1	0	0	0	0	1	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0012	903	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEB_chr6_41678978_41740608	0/0	t0013	891	1	1	0	0	0	0	copy fasta	TFEB	chr6	41678978	41740608
TFEC_chr7_115930152_116035763	0/1	t0001	5603	120	36	21	43	4	15	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0002	5603	103	8	22	56	4	13	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	1/0	t0003	5603	64	6	15	37	1	4	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0004	5603	19	3	10	0	4	2	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0005	5603	13	0	0	13	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0006	5603	8	8	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0007	5603	7	6	1	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0008	5602	6	0	0	6	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0009	5603	4	0	0	0	1	3	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0010	5603	4	4	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0011	5603	3	0	0	3	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0012	5600	3	0	0	3	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0013	5603	3	0	3	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0014	5603	3	3	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0015	5603	3	3	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0016	5603	3	3	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0017	5603	2	0	0	2	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0018	5603	2	1	0	0	0	1	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0019	5603	2	2	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0020	5603	2	0	0	2	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0021	5603	2	0	0	0	0	2	copy fasta	TFEC	chr7	115930152	116035763