JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFEC_chr7_115930152_116035763	0/0	t0022	5603	2	0	0	0	0	2	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0023	5603	2	2	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0024	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0025	5603	1	0	0	0	0	1	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0026	5603	1	0	0	0	0	1	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0027	5603	1	0	0	0	0	1	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0028	5603	1	0	1	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0029	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0030	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0031	5603	1	0	1	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0032	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0033	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0034	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0035	5603	1	1	0	0	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0036	5603	1	0	0	1	0	0	copy fasta	TFEC	chr7	115930152	116035763
TFEC_chr7_115930152_116035763	0/0	t0037	5603	1	0	0	0	0	1	copy fasta	TFEC	chr7	115930152	116035763
TFF1_chr21_42357282_42371535	1/1	t0001	238	305	82	66	105	13	37	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0002	238	150	12	11	118	1	8	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0003	238	13	0	8	0	2	3	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0004	238	2	2	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0005	238	1	0	1	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0006	238	1	1	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0007	238	1	0	0	1	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF1_chr21_42357282_42371535	0/0	t0008	238	1	1	0	0	0	0	copy fasta	TFF1	chr21	42357282	42371535
TFF2_chr21_42341357_42355994	1/0	t0001	214	220	14	31	147	8	19	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/1	t0002	214	184	42	49	59	3	30	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	t0003	217	48	41	6	0	0	1	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	t0004	214	1	0	0	0	1	0	copy fasta	TFF2	chr21	42341357	42355994
TFF2_chr21_42341357_42355994	0/0	t0005	217	1	1	0	0	0	0	copy fasta	TFF2	chr21	42341357	42355994
TFF3_chr21_42306667_42320409	1/1	t0001	625	445	94	85	198	18	48	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0002	625	2	0	0	2	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0003	625	1	0	0	1	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0004	625	1	0	1	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0005	625	1	1	0	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0006	625	1	1	0	0	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFF3_chr21_42306667_42320409	0/0	t0007	625	1	0	0	1	0	0	copy fasta	TFF3	chr21	42306667	42320409
TFG_chr3_100704494_100753964	0/1	t0001	705	124	29	21	58	7	8	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	1/0	t0002	705	119	30	18	61	2	7	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0003	705	77	22	13	25	6	11	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0004	705	10	0	2	2	1	5	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0005	703	6	0	5	0	0	1	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0006	706	4	3	1	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0007	705	3	0	3	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0008	705	2	2	0	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0009	705	1	0	0	1	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0010	705	1	0	1	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0011	705	1	1	0	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0012	705	1	0	0	1	0	0	copy fasta	TFG	chr3	100704494	100753964
TFG_chr3_100704494_100753964	0/0	t0013	705	1	1	0	0	0	0	copy fasta	TFG	chr3	100704494	100753964
TFIP11_chr22_26486240_26517473	0/1	t0001	1026	260	53	46	129	8	23	copy fasta	TFIP11	chr22	26486240	26517473