Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRD3OS_chr9_134020481_134036587	0/0	t0045	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0046	5427	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0047	5428	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0048	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0049	5425	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0050	5420	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0051	5427	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0052	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0053	5429	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0054	5428	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0055	5428	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0056	5428	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0057	5430	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0058	5428	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0059	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0060	5428	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0061	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0062	5428	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0063	5426	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0064	5427	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0065	5426	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0066	5430	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0067	5424	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0068	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0069	5426	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0070	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0071	5428	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0072	5429	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0073	5429	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0074	5428	1	0	0	1	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0075	5429	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0076	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0077	5429	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0078	5428	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0079	5426	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0080	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0081	5427	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0082	5429	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0083	5427	1	0	1	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0084	5428	1	1	0	0	0	0	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0085	5428	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3OS_chr9_134020481_134036587	0/0	t0086	5426	1	0	0	0	0	1	copy fasta	BRD3OS	chr9	134020481	134036587
BRD3_chr9_134025305_134073026	1/0	t0001	3481	65	11	14	31	3	5	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0002	3477	50	2	10	25	3	10	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/1	t0003	3482	18	2	5	7	0	3	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0004	3478	14	1	2	10	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0005	3480	12	2	6	1	3	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0006	3482	9	1	1	7	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0007	3481	9	3	1	1	1	3	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0008	3482	8	6	0	1	0	1	copy fasta	BRD3	chr9	134025305	134073026