JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFIP11_chr22_26486240_26517473	0/0	t0002	1026	74	1	12	46	5	10	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	1/0	t0003	1026	63	25	11	22	0	4	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0004	1023	4	4	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0005	1026	4	4	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0006	1026	3	1	2	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0007	1026	3	1	2	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0008	1026	2	0	1	0	1	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0009	1026	2	2	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0010	1026	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0011	1026	1	0	0	0	0	1	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0012	1026	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0013	1026	1	1	0	0	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFIP11_chr22_26486240_26517473	0/0	t0014	1026	1	0	0	1	0	0	copy fasta	TFIP11	chr22	26486240	26517473
TFPI2_chr7_93880396_93895753	1/1	t0001	1500	178	61	33	50	10	22	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0002	1500	171	11	23	114	4	19	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0003	1500	71	9	10	45	0	7	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0004	1500	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0005	1500	1	0	0	1	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0006	1500	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0007	1500	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0008	1500	1	0	1	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0009	1500	1	0	1	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0010	1500	1	0	0	1	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0011	1500	1	0	0	1	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0012	1500	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI2_chr7_93880396_93895753	0/0	t0013	1500	1	1	0	0	0	0	copy fasta	TFPI2	chr7	93880396	93895753
TFPI_chr2_187459230_187559435	0/1	t0001	2944	130	11	18	80	5	15	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0002	2942	60	20	14	16	1	9	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0003	2945	53	10	12	30	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0004	2934	16	1	2	8	1	4	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	1/0	t0005	2945	11	10	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0006	2945	7	0	5	2	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0007	2941	7	7	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0008	2944	5	4	0	0	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0009	2943	4	4	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0010	2943	4	1	2	0	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0011	2940	4	0	0	4	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0012	2945	4	2	0	1	1	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0013	2943	3	3	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0014	2945	3	3	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0015	2947	3	3	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0016	2944	2	0	0	2	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0017	2944	2	2	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0018	2946	2	2	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0019	2944	2	1	1	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0020	2945	2	2	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0021	2946	2	0	0	2	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0022	2944	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0023	2942	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0024	2947	1	1	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435