JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TFPI_chr2_187459230_187559435	0/0	t0025	2948	1	1	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0026	2935	1	0	0	0	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0027	2942	1	0	0	0	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0028	2944	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0029	2942	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0030	2944	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0031	2944	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0032	2946	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0033	2945	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0034	2947	1	1	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0035	2946	1	1	0	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0036	2957	1	0	0	1	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0037	2944	1	0	1	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0038	2940	1	0	1	0	0	0	copy fasta	TFPI	chr2	187459230	187559435
TFPI_chr2_187459230_187559435	0/0	t0039	2944	1	0	0	0	0	1	copy fasta	TFPI	chr2	187459230	187559435
TFPT_chr19_54102020_54120657	0/1	t0001	419	405	84	79	190	12	39	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	t0002	419	13	13	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	t0003	419	10	0	7	2	0	1	copy fasta	TFPT	chr19	54102020	54120657
TFPT_chr19_54102020_54120657	0/0	t0004	419	1	1	0	0	0	0	copy fasta	TFPT	chr19	54102020	54120657
TFR2_chr7_100615420_100646552	1/1	t0001	481	333	91	56	130	14	40	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	t0002	504	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	t0003	481	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFR2_chr7_100615420_100646552	0/0	t0004	481	1	1	0	0	0	0	copy fasta	TFR2	chr7	100615420	100646552
TFRC_chr3_196044284_196087090	1/0	t0001	2730	181	30	31	100	2	17	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0002	2730	63	4	11	39	2	7	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0003	2730	41	16	12	3	4	6	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0004	2729	20	0	7	2	1	10	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0005	2730	15	14	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0006	2730	13	1	2	2	0	8	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0007	2730	10	7	2	0	1	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0008	2730	8	8	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0009	2729	7	1	4	0	1	1	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0010	2729	6	5	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0011	2730	3	2	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0012	2730	3	0	0	3	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0013	2730	2	0	0	2	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0014	2730	2	0	1	0	1	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/1	t0015	2730	2	0	1	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0016	2730	1	0	0	0	0	1	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0017	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0018	2730	1	0	0	1	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0019	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0020	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0021	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0022	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TFRC_chr3_196044284_196087090	0/0	t0023	2730	1	1	0	0	0	0	copy fasta	TFRC	chr3	196044284	196087090
TF_chr3_133741393_133801641	0/0	t0001	16743	14	0	1	10	0	3	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0002	16743	11	0	3	7	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0003	18062	9	0	1	8	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0004	18070	9	0	0	9	0	0	copy fasta	TF	chr3	133741393	133801641