JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TF_chr3_133741393_133801641	0/0	t0005	16745	8	0	1	4	2	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0006	16743	8	0	0	6	0	2	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0007	16743	6	0	2	0	2	2	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0008	16744	5	0	0	3	0	2	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0009	18062	4	0	2	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0010	18064	4	0	0	4	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0011	16745	4	1	1	1	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0012	18069	3	3	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0013	18063	3	0	0	3	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0014	18061	3	0	0	3	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0015	18061	3	1	1	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0016	18081	3	3	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0017	18067	3	0	0	3	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/1	t0018	18070	3	0	1	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0019	18069	3	0	1	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0020	16743	3	0	1	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0021	18066	3	3	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0022	18067	3	3	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0023	18024	3	3	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0024	18171	3	0	3	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0025	18172	3	0	0	3	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0026	16745	3	0	0	3	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0027	18070	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0028	18073	2	0	2	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0029	18071	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0030	18060	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0031	18063	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0032	18062	2	0	1	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0033	18062	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0034	18064	2	0	0	1	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0035	18072	2	0	1	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0036	18065	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0037	18067	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0038	18068	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0039	18070	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0040	18071	2	0	1	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0041	18019	2	0	0	0	0	2	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0042	18018	2	0	0	1	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0043	18061	2	0	2	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0044	18011	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0045	18060	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0046	18067	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0047	18019	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0048	18172	2	0	2	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0049	17749	2	0	1	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0050	16745	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0051	16744	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0052	16744	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0053	16745	2	0	0	2	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0054	16745	2	0	0	0	0	2	copy fasta	TF	chr3	133741393	133801641