JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TF_chr3_133741393_133801641	0/0	t0055	16744	2	0	2	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0056	18069	2	1	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0057	16742	2	1	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0058	16747	2	0	2	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0059	18069	2	2	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0060	18069	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0061	18069	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0062	18068	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0063	18066	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0064	18065	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0065	18067	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0066	18057	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	1/0	t0067	18070	1	0	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0068	18070	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0069	18071	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0070	18071	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0071	18063	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0072	18071	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0073	18069	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0074	18073	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0075	18074	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0076	18072	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0077	18076	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0078	18072	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0079	18070	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0080	18070	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0081	18070	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0082	18072	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0083	18068	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0084	18071	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0085	18070	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0086	18061	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0087	18021	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0088	18014	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0089	18063	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0090	18062	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0091	18064	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0092	18064	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0093	18062	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0094	18063	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0095	18063	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0096	18013	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0097	18062	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0098	18061	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0099	18061	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0100	18062	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0101	16745	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0102	18062	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0103	18061	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0104	18061	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641