JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TF_chr3_133741393_133801641	0/0	t0105	18061	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0106	18061	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0107	18060	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0108	18062	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0109	18060	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0110	18061	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0111	18060	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0112	18071	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0113	18065	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0114	18073	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0115	18074	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0116	18074	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0117	18065	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0118	18063	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0119	18064	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0120	18061	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0121	17749	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0122	16745	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0123	16743	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0124	16742	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0125	16743	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0126	16743	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0127	18064	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0128	18081	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0129	18082	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0130	18083	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0131	18081	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0132	18082	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0133	18081	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0134	18081	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0135	18082	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0136	18077	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0137	18078	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0138	18072	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0139	18171	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0140	18067	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0141	18066	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0142	18070	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0143	18068	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0144	18069	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0145	18071	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0146	18070	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0147	18072	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0148	18070	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0149	18072	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0150	18069	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0151	18070	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0152	18068	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0153	18069	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0154	18068	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641