JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TF_chr3_133741393_133801641	0/0	t0155	18067	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0156	18069	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0157	18074	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0158	18022	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0159	18021	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0160	18069	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0161	18069	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0162	18071	1	0	0	0	1	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0163	18072	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0164	18073	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0165	18070	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0166	18068	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0167	18069	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0168	18070	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0169	18070	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0170	16743	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0171	16741	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0172	18071	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0173	18062	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0174	18060	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0175	18019	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0176	18018	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0177	18018	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0178	17934	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0179	17933	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0180	18076	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0181	18026	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0182	18071	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0183	18061	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0184	18070	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0185	18010	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0186	18060	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0187	18060	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0188	18064	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0189	18016	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0190	18019	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0191	18303	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0192	18076	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0193	18172	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0194	18173	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0195	18074	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0196	18074	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0197	18171	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0198	18065	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0199	18058	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0200	18074	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0201	18172	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0202	18171	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0203	18269	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0204	18072	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641