JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TF_chr3_133741393_133801641	0/0	t0255	16745	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0256	16746	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0257	16743	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0258	16744	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0259	16743	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0260	18070	1	0	0	1	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0261	18060	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0262	18066	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0263	16745	1	0	0	0	0	1	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0264	18083	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0265	18074	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0266	18073	1	0	1	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0267	18073	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TF_chr3_133741393_133801641	0/0	t0268	18069	1	1	0	0	0	0	copy fasta	TF	chr3	133741393	133801641
TGDS_chr13_94569054_94601152	1/1	t0001	745	358	81	66	153	12	44	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0002	745	5	4	1	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0003	745	3	2	1	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0004	745	2	2	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0005	745	2	2	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0006	745	1	0	0	1	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0007	745	1	1	0	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0008	745	1	0	1	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGDS_chr13_94569054_94601152	0/0	t0009	745	1	0	1	0	0	0	copy fasta	TGDS	chr13	94569054	94601152
TGFA_chr2_70442284_70558826	0/1	t0001	3635	88	15	17	42	3	10	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0002	3631	58	8	19	25	2	4	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0003	3635	52	5	7	33	1	6	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0004	3635	28	2	3	17	1	5	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	1/0	t0005	3635	15	11	2	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0006	3635	14	3	3	3	0	5	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0007	3635	13	1	4	8	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0008	3635	10	8	2	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0009	3635	5	1	4	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0010	3635	5	0	0	5	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0011	3635	4	4	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0012	3635	4	4	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0013	3635	4	4	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0014	3636	4	4	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0015	3635	4	4	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0016	3636	3	3	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0017	3645	3	3	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0018	3631	2	0	0	2	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0019	3632	2	2	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0020	3632	2	0	2	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0021	3636	2	1	1	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0022	3635	2	2	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0023	3635	2	0	0	0	0	2	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0024	3635	2	2	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0025	3635	2	0	0	2	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0026	3631	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0027	3635	1	1	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826