JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFA_chr2_70442284_70558826	0/0	t0028	3635	1	1	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0029	3631	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0030	3636	1	0	1	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0031	3635	1	0	0	0	1	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0032	3635	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0033	3635	1	1	0	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0034	3635	1	0	0	0	0	1	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0035	3634	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0036	3649	1	0	0	0	0	1	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0037	3635	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0038	3635	1	0	0	1	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFA_chr2_70442284_70558826	0/0	t0039	3635	1	0	1	0	0	0	copy fasta	TGFA	chr2	70442284	70558826
TGFB1I1_chr16_31467152_31482958	1/0	t0001	420	207	74	19	78	4	31	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/1	t0002	420	120	4	33	70	6	6	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	t0003	420	77	18	14	26	6	13	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	t0004	420	4	0	0	4	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	t0005	420	1	1	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1I1_chr16_31467152_31482958	0/0	t0006	420	1	1	0	0	0	0	copy fasta	TGFB1I1	chr16	31467152	31482958
TGFB1_chr19_41325323_41358922	1/1	t0001	1608	342	81	69	127	17	46	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0002	1609	13	6	4	0	1	2	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0003	1608	5	5	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0004	1608	4	0	0	4	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0005	1609	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0006	1608	1	0	0	1	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0007	1608	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0008	1608	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0009	1608	1	0	0	1	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0010	1608	1	0	1	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0011	1608	1	0	0	1	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB1_chr19_41325323_41358922	0/0	t0012	1608	1	1	0	0	0	0	copy fasta	TGFB1	chr19	41325323	41358922
TGFB2_chr1_218340336_218449619	0/0	t0001	4624	46	9	12	13	2	10	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0002	4622	37	2	3	26	1	5	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0003	4628	29	11	4	11	0	3	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0004	4626	23	4	4	15	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/1	t0005	4623	9	3	2	3	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0006	4625	8	0	0	6	2	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0007	4623	8	0	5	2	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0008	4622	7	0	6	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0009	4627	6	1	1	2	0	2	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0010	4636	5	0	0	5	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0011	4626	4	3	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0012	4630	4	0	0	4	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0013	4628	3	2	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0014	4625	3	2	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0015	4624	3	0	0	2	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0016	4624	3	3	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0017	4619	3	0	0	3	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0018	4636	3	3	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0019	4630	3	2	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0020	4628	2	1	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619