JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFB2_chr1_218340336_218449619	0/0	t0021	4636	2	2	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0022	4629	2	0	0	2	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0023	4627	2	0	0	2	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0024	4627	2	0	0	2	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0025	4626	2	0	1	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0026	4639	2	1	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0027	4634	2	2	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0028	4636	2	2	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0029	4632	2	2	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0030	4638	2	0	0	2	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0031	4630	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0032	4628	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0033	4626	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	1/0	t0034	4624	1	0	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0035	4632	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0036	4630	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0037	4630	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0038	4625	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0039	4629	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0040	4628	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0041	4628	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0042	4627	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0043	4626	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0044	4626	1	0	0	0	1	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0045	4626	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0046	4626	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0047	4628	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0048	4630	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0049	4626	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0050	4632	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0051	4621	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0052	4621	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0053	4621	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0054	4622	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0055	4623	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0056	4623	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0057	4631	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0058	4624	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0059	4621	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0060	4624	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0061	4624	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0062	4624	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0063	4630	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0064	4623	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0065	4623	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0066	4622	1	0	1	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0067	4622	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0068	4624	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0069	4622	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0070	4622	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619