JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFB2_chr1_218340336_218449619	0/0	t0071	4622	1	0	0	0	0	1	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0072	4623	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0073	4623	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0074	4623	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0075	4622	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0076	4640	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0077	4639	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0078	4633	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0079	4634	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0080	4632	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0081	4634	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0082	4638	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0083	4630	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0084	4628	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0085	4628	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0086	4634	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0087	4633	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0088	4644	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0089	4639	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0090	4637	1	1	0	0	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB2_chr1_218340336_218449619	0/0	t0091	4630	1	0	0	1	0	0	copy fasta	TGFB2	chr1	218340336	218449619
TGFB3_chr14_75953097_75986995	1/1	t0001	2193	310	66	55	152	7	28	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0002	2193	10	1	5	0	0	4	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0003	2187	9	0	8	0	1	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0004	2193	8	8	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0005	2192	7	1	1	5	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0006	2193	6	0	0	6	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0007	2193	5	5	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0008	2193	3	1	0	0	0	2	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0009	2194	3	2	1	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0010	2194	2	2	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0011	2193	2	2	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0012	2193	2	2	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0013	2186	1	0	1	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0014	2193	1	1	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0015	2193	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0016	2193	1	1	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0017	2192	1	1	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0018	2193	1	0	1	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0019	2193	1	1	0	0	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0020	2194	1	0	0	0	0	1	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0021	2193	1	0	0	0	0	1	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0022	2192	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFB3_chr14_75953097_75986995	0/0	t0023	2193	1	0	0	1	0	0	copy fasta	TGFB3	chr14	75953097	75986995
TGFBI_chr5_136023988_136068818	1/1	t0001	661	216	34	37	108	13	22	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	t0002	661	149	33	19	74	3	20	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	t0003	661	23	21	2	0	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	t0004	661	15	6	0	9	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBI_chr5_136023988_136068818	0/0	t0005	661	1	0	0	1	0	0	copy fasta	TGFBI	chr5	136023988	136068818
TGFBR1_chr9_99100113_99159192	1/1	t0001	4981	167	32	22	85	5	21	copy fasta	TGFBR1	chr9	99100113	99159192