JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFBR1_chr9_99100113_99159192	0/0	t0002	4983	73	0	8	60	0	5	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0003	4982	26	8	6	4	2	6	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0004	4981	19	3	10	3	0	3	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0005	4981	7	2	1	0	4	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0006	4982	7	1	1	0	2	3	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0007	4981	5	5	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0008	4981	5	0	0	5	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0009	4981	4	0	3	0	1	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0010	4982	4	0	3	0	0	1	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0011	4983	3	0	0	3	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0012	4981	3	1	2	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0013	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0014	4981	2	0	2	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0015	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0016	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0017	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0018	4982	2	1	0	0	0	1	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0019	4982	2	0	0	2	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0020	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0021	4981	2	2	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0022	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0023	4982	1	0	1	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0024	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0025	4981	1	0	1	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0026	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0027	4981	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0028	4981	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0029	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0030	4981	1	0	1	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0031	4983	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0032	4982	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0033	4981	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0034	4981	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0035	4981	1	0	1	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0036	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0037	4982	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0038	4982	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0039	4981	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0040	4983	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0041	4982	1	0	0	1	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR1_chr9_99100113_99159192	0/0	t0042	4981	1	1	0	0	0	0	copy fasta	TGFBR1	chr9	99100113	99159192
TGFBR2_chr3_30601601_30699142	1/0	t0001	2827	216	16	38	128	9	24	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0002	2826	47	5	9	18	4	11	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0003	2825	18	8	7	0	0	3	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0004	2829	12	12	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0005	2827	11	1	0	7	0	3	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0006	2825	11	7	4	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0007	2828	10	9	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0008	2829	7	7	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/1	t0009	2826	7	0	3	0	3	0	copy fasta	TGFBR2	chr3	30601601	30699142