JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFBR2_chr3_30601601_30699142	0/0	t0010	2827	5	1	1	1	0	2	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0011	2829	5	4	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0012	2826	4	1	1	0	1	1	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0013	2827	3	0	0	3	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0014	2825	2	2	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0015	2829	2	2	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0016	2825	2	2	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0017	2827	2	2	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0018	2829	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0019	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0020	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0021	2829	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0022	2829	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0023	2827	1	0	0	0	1	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0024	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0025	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0026	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0027	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0028	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0029	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0030	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0031	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0032	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0033	2825	1	0	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0034	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0035	2829	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0036	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0037	2827	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0038	2828	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0039	2802	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0040	2827	1	0	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0041	2826	1	1	0	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0042	2826	1	0	1	0	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR2_chr3_30601601_30699142	0/0	t0043	2827	1	0	0	1	0	0	copy fasta	TGFBR2	chr3	30601601	30699142
TGFBR3L_chr19_7909830_7924097	1/1	t0001	1625	226	56	45	84	11	28	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0002	1625	121	28	21	54	2	16	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0003	1625	67	7	15	35	5	5	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0004	1625	24	6	0	18	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0005	1624	3	0	2	0	0	1	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0006	1625	1	0	0	1	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0007	1625	1	0	1	0	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0008	1625	1	0	0	1	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0009	1625	1	1	0	0	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3L_chr19_7909830_7924097	0/0	t0010	1625	1	0	0	1	0	0	copy fasta	TGFBR3L	chr19	7909830	7924097
TGFBR3_chr1_91675343_91891151	0/0	t0001	3786	39	7	10	20	0	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0002	3786	29	2	5	22	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0003	3785	29	6	16	0	4	3	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0004	3785	23	10	1	10	0	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0005	3784	23	6	9	6	0	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0006	3784	23	2	3	11	1	6	copy fasta	TGFBR3	chr1	91675343	91891151