JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFBR3_chr1_91675343_91891151	0/0	t0007	3784	16	1	6	5	0	4	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0008	3787	15	11	0	1	2	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0009	3784	10	3	1	4	0	2	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0010	3783	6	6	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0011	3786	4	0	1	0	2	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	1/1	t0012	3784	4	2	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0013	3787	3	3	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0014	3785	3	1	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0015	3784	3	0	1	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0016	3787	3	3	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0017	3786	3	3	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0018	3785	3	3	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0019	3784	3	3	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0020	3784	2	0	0	1	1	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0021	3785	2	0	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0022	3786	2	0	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0023	3785	2	0	1	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0024	3784	2	2	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0025	3784	2	0	0	2	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0026	3784	2	0	1	0	1	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0027	3786	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0028	3784	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0029	3785	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0030	3783	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0031	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0032	3783	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0033	3786	1	0	0	0	1	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0034	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0035	3785	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0036	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0037	3786	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0038	3785	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0039	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0040	3786	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0041	3786	1	0	0	1	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0042	3786	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0043	3785	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0044	3784	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0045	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0046	3784	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0047	3783	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0048	3783	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0049	3783	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0050	3786	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0051	3786	1	0	1	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0052	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0053	3784	1	1	0	0	0	0	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBR3_chr1_91675343_91891151	0/0	t0054	3784	1	0	0	0	0	1	copy fasta	TGFBR3	chr1	91675343	91891151
TGFBRAP1_chr2_105259414_105334735	0/0	t0001	3070	114	29	10	65	2	8	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0002	3070	63	1	13	33	4	12	copy fasta	TGFBRAP1	chr2	105259414	105334735