JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGFBRAP1_chr2_105259414_105334735	0/0	t0003	3070	31	8	10	9	3	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	1/0	t0004	3098	20	0	4	7	2	6	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0005	3070	19	12	2	1	0	4	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/1	t0006	3070	18	1	6	7	2	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0007	3098	18	8	1	8	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0008	3098	11	0	0	11	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0009	3098	8	3	1	0	2	2	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0010	3070	8	0	6	0	1	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0011	3070	7	1	0	6	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0012	3071	5	2	0	2	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0013	3070	4	4	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0014	3070	4	4	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0015	3070	4	0	3	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0016	3070	4	0	2	0	0	2	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0017	3070	4	0	3	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0018	3071	3	2	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0019	3070	3	3	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0020	3070	3	0	0	3	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0021	3070	2	0	0	1	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0022	3070	2	0	0	2	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0023	3070	2	2	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0024	3098	2	0	0	2	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0025	3071	2	0	0	2	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0026	3098	2	0	0	2	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0027	3056	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0028	3070	1	0	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0029	3070	1	0	0	0	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0030	3070	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0031	3070	1	0	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0032	3070	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0033	3070	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0034	3098	1	0	0	0	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0035	3098	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0036	3080	1	0	0	0	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0037	3070	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0038	3070	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0039	3098	1	0	0	1	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0040	3098	1	0	1	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0041	3098	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0042	3071	1	0	0	0	0	1	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGFBRAP1_chr2_105259414_105334735	0/0	t0043	3099	1	1	0	0	0	0	copy fasta	TGFBRAP1	chr2	105259414	105334735
TGIF1_chr18_3445172_3464978	1/0	t0001	2357	195	7	40	124	5	18	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0002	2357	43	6	8	24	0	5	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/1	t0003	2357	39	10	9	6	7	6	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0004	2357	22	4	0	14	0	4	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0005	2357	15	1	1	11	0	2	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0006	2357	14	0	3	9	0	2	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0007	2356	10	10	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0008	2356	10	3	4	1	2	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0009	2356	9	1	6	0	0	2	copy fasta	TGIF1	chr18	3445172	3464978