JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGIF1_chr18_3445172_3464978	0/0	t0010	2356	5	2	0	1	0	2	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0011	2355	4	4	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0012	2355	4	4	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0013	2356	4	4	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0014	2357	4	2	2	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0015	2357	4	0	0	4	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0016	2356	3	3	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0017	2356	3	0	0	0	0	3	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0018	2357	2	0	0	2	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0019	2355	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0020	2356	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0021	2356	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0022	2356	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0023	2358	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0024	2355	2	0	2	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0025	2356	2	1	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0026	2356	2	0	0	2	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0027	2358	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0028	2358	2	0	0	2	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0029	2355	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0030	2357	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0031	2357	2	2	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0032	2357	1	0	0	0	0	1	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0033	2357	1	0	0	0	1	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0034	2355	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0035	2355	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0036	2356	1	0	1	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0037	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0038	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0039	2356	1	0	0	0	0	1	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0040	2356	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0041	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0042	2357	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0043	2357	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0044	2357	1	0	0	0	1	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0045	2357	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0046	2357	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0047	2357	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0048	2358	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0049	2358	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0050	2358	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0051	2355	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0052	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0053	2356	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0054	2356	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0055	2356	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0056	2357	1	0	0	1	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0057	2357	1	0	1	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0058	2357	1	0	0	0	0	1	copy fasta	TGIF1	chr18	3445172	3464978
TGIF1_chr18_3445172_3464978	0/0	t0059	2357	1	1	0	0	0	0	copy fasta	TGIF1	chr18	3445172	3464978