JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGM2_chr20_38122385_38170270	0/0	t0005	2907	15	12	3	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0006	2907	9	9	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0007	2907	7	6	1	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0008	2907	3	3	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0009	2907	3	1	0	0	1	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0010	2907	3	3	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0011	2907	2	2	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0012	2907	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0013	2907	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0014	2907	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0015	2907	1	0	0	0	0	1	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0016	2907	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0017	2907	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0018	2907	1	0	0	1	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0019	2907	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0020	2907	1	1	0	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM2_chr20_38122385_38170270	0/0	t0021	2907	1	0	1	0	0	0	copy fasta	TGM2	chr20	38122385	38170270
TGM3_chr20_2291001_2346079	0/0	t0001	562	265	68	40	123	6	28	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	1/1	t0002	562	70	11	29	8	6	14	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	t0003	562	15	5	1	9	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	t0004	562	4	0	0	4	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	t0005	562	4	4	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	t0006	562	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM3_chr20_2291001_2346079	0/0	t0007	562	1	1	0	0	0	0	copy fasta	TGM3	chr20	2291001	2346079
TGM4_chr3_44869608_44919990	0/0	t0001	1337	184	52	34	62	9	27	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	1/1	t0002	1337	83	14	30	21	7	9	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0003	1337	14	14	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0004	1337	6	0	0	6	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0005	1337	5	4	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0006	1337	4	4	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0007	1337	4	0	4	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0008	1337	3	3	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0009	1337	3	0	2	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0010	1337	3	2	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0011	1337	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0012	618	1	1	0	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0013	1337	1	0	0	0	0	1	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0014	1337	1	0	0	1	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM4_chr3_44869608_44919990	0/0	t0015	1337	1	0	1	0	0	0	copy fasta	TGM4	chr3	44869608	44919990
TGM5_chr15_43227590_43271928	1/1	t0001	681	304	68	55	132	14	33	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0002	681	23	17	0	6	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0003	681	2	0	0	2	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0004	681	2	2	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0005	681	1	0	1	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0006	681	1	0	0	0	0	1	copy fasta	TGM5	chr15	43227590	43271928
TGM5_chr15_43227590_43271928	0/0	t0007	681	1	1	0	0	0	0	copy fasta	TGM5	chr15	43227590	43271928
TGM6_chr20_2375901_2437753	0/0	t0001	179	241	65	40	102	8	26	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	1/1	t0002	179	170	20	31	86	7	24	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	t0003	178	7	6	1	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM6_chr20_2375901_2437753	0/0	t0004	179	1	0	0	0	1	0	copy fasta	TGM6	chr20	2375901	2437753