JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGM6_chr20_2375901_2437753	0/0	t0005	179	1	1	0	0	0	0	copy fasta	TGM6	chr20	2375901	2437753
TGM7_chr15_43271271_43307255	0/0	t0001	190	333	74	51	158	12	38	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	t0002	190	7	6	1	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGM7_chr15_43271271_43307255	0/0	t0003	190	2	2	0	0	0	0	copy fasta	TGM7	chr15	43271271	43307255
TGOLN2_chr2_85313027_85332989	0/0	t0001	4736	114	6	28	57	5	18	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0002	4734	98	40	11	41	1	5	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	1/1	t0003	4737	60	13	12	17	6	10	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0004	4736	19	0	3	16	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0005	4737	11	10	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0006	4735	10	0	0	10	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0007	4737	8	1	5	0	1	1	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0008	4734	5	0	0	5	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0009	4736	4	0	3	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0010	4736	3	3	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0011	4735	3	0	2	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0012	4733	3	0	0	3	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0013	4736	3	0	0	3	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0014	4736	3	1	0	2	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0015	4738	3	3	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0016	4736	3	3	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0017	4734	2	0	0	2	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0018	4736	2	0	2	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0019	4736	2	0	2	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0020	4734	2	0	2	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0021	4736	2	0	0	2	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0022	4736	2	0	0	2	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0023	4736	2	0	0	2	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0024	4737	2	0	0	0	0	2	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0025	4737	2	2	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0026	4736	2	1	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0027	4734	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0028	4736	1	0	0	0	0	1	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0029	4734	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0030	4736	1	0	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0031	4737	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0032	4734	1	0	0	0	0	1	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0033	4734	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0034	4734	1	0	0	0	1	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0035	4734	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0036	4736	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0037	4737	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0038	4736	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0039	4736	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0040	4737	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0041	4735	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0042	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0043	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0044	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0045	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0046	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989