JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TGOLN2_chr2_85313027_85332989	0/0	t0047	4738	1	0	1	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0048	4737	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0049	4736	1	0	0	1	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGOLN2_chr2_85313027_85332989	0/0	t0050	4736	1	1	0	0	0	0	copy fasta	TGOLN2	chr2	85313027	85332989
TGS1_chr8_55768446_55831445	0/0	t0001	1916	215	49	36	98	7	25	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/1	t0002	1916	69	3	9	47	2	7	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0003	1917	33	17	6	1	1	8	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0004	1914	13	2	6	0	2	3	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0005	1916	8	7	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0006	1916	7	0	0	7	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0007	1911	5	5	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0008	1916	4	4	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0009	1917	4	4	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0010	1916	3	0	0	3	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0011	1917	2	1	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	1/0	t0012	1916	1	0	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0013	1917	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0014	1916	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0015	1916	1	0	1	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0016	1916	1	1	0	0	0	0	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0017	1916	1	0	0	0	0	1	copy fasta	TGS1	chr8	55768446	55831445
TGS1_chr8_55768446_55831445	0/0	t0018	1916	1	0	0	1	0	0	copy fasta	TGS1	chr8	55768446	55831445
TG_chr8_132861958_133139899	1/1	t0001	149	216	86	36	54	8	30	copy fasta	TG	chr8	132861958	133139899
THADA_chr2_43225851_43601038	1/1	t0001	230	194	68	46	30	8	40	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	t0002	230	9	6	3	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	t0003	230	2	2	0	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THADA_chr2_43225851_43601038	0/0	t0004	230	1	0	1	0	0	0	copy fasta	THADA	chr2	43225851	43601038
THAP10_chr15_70876342_70897433	1/0	t0001	1274	313	84	49	143	8	28	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/1	t0002	1274	93	4	25	53	1	9	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	t0003	1274	10	0	2	0	2	6	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	t0004	1274	2	0	2	0	0	0	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	t0005	1274	1	0	0	0	0	1	copy fasta	THAP10	chr15	70876342	70897433
THAP10_chr15_70876342_70897433	0/0	t0006	1274	1	0	0	0	1	0	copy fasta	THAP10	chr15	70876342	70897433
THAP11_chr16_67837320_67849195	1/1	t0001	932	270	76	59	97	4	32	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0002	932	9	9	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0003	932	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0004	932	1	0	1	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0005	932	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0006	932	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0007	932	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0008	932	1	0	0	1	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP11_chr16_67837320_67849195	0/0	t0009	950	1	1	0	0	0	0	copy fasta	THAP11	chr16	67837320	67849195
THAP12_chr11_76344956_76386132	1/1	t0001	1205	364	65	68	172	14	43	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0002	1205	4	4	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0003	1205	4	0	0	4	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0004	1205	3	3	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0005	1205	3	3	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0006	1205	2	0	0	2	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0007	1205	1	1	0	0	0	0	copy fasta	THAP12	chr11	76344956	76386132
THAP12_chr11_76344956_76386132	0/0	t0008	1205	1	0	0	0	0	1	copy fasta	THAP12	chr11	76344956	76386132