Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRD3_chr9_134025305_134073026	0/0	t0059	3481	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0060	3480	1	0	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0061	3480	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0062	3481	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0063	3480	1	0	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0064	3480	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0065	3480	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0066	3480	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0067	3481	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0068	3479	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0069	3483	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0070	3479	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0071	3480	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0072	3478	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0073	3478	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0074	3480	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0075	3478	1	0	1	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0076	3478	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0077	3481	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0078	3477	1	0	0	0	1	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0079	3477	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0080	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0081	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0082	3481	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0083	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0084	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0085	3477	1	0	0	0	0	1	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0086	3481	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0087	3483	1	1	0	0	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0088	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0089	3478	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0090	3479	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD3_chr9_134025305_134073026	0/0	t0091	3480	1	0	0	1	0	0	copy fasta	BRD3	chr9	134025305	134073026
BRD4_chr19_15230519_15337539	0/0	t0001	3146	19	8	7	2	0	2	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0002	3147	18	3	4	7	0	4	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0003	3144	15	1	6	5	0	3	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0004	3148	14	4	2	3	1	4	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0005	3149	11	1	4	5	1	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	1/1	t0006	3143	11	1	2	5	1	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0007	3145	8	2	0	5	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0008	3134	7	7	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0009	3151	6	2	1	1	0	2	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0010	3150	5	1	3	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0011	3142	5	0	1	4	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0012	3146	5	0	1	3	0	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0013	3142	4	0	1	0	1	2	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0014	3143	4	2	0	0	1	1	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0015	3146	3	3	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0016	3143	3	1	0	2	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0017	3152	2	0	1	0	1	0	copy fasta	BRD4	chr19	15230519	15337539