JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THAP1_chr8_42831674_42848325	0/1	t0001	1520	261	51	56	116	8	29	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0002	1520	11	10	1	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0003	1520	10	9	1	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0004	1521	7	0	0	7	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0005	1520	6	6	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0006	1520	4	4	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0007	1520	2	0	1	0	0	1	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0008	1520	2	0	0	2	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0009	1520	1	0	0	1	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0010	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0011	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0012	1520	1	0	0	0	0	1	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	1/0	t0013	1520	1	0	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0014	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0015	1520	1	0	1	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0016	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0017	1520	1	0	0	0	0	1	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0018	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP1_chr8_42831674_42848325	0/0	t0019	1520	1	1	0	0	0	0	copy fasta	THAP1	chr8	42831674	42848325
THAP2_chr12_71659301_71685644	0/0	t0001	3746	195	30	20	117	6	22	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	1/1	t0002	3746	91	8	25	36	7	13	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0003	3750	32	20	5	2	0	5	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0004	3747	12	11	1	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0005	3747	12	4	1	2	1	4	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0006	3745	8	8	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0007	3745	5	5	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0008	3750	4	3	1	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0009	3746	3	0	1	2	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0010	3746	2	2	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0011	3746	1	1	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0012	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0013	3746	1	1	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0014	3745	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0015	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0016	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0017	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0018	3746	1	1	0	0	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0019	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP2_chr12_71659301_71685644	0/0	t0020	3746	1	0	0	1	0	0	copy fasta	THAP2	chr12	71659301	71685644
THAP3_chr1_6619868_6638562	1/1	t0001	642	388	81	76	172	16	41	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0002	642	11	10	1	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0003	642	2	2	0	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0004	642	2	2	0	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0005	642	2	0	1	0	0	1	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0006	642	1	0	0	1	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0007	642	1	0	0	1	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0008	642	1	0	0	1	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0009	642	1	0	0	1	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP3_chr1_6619868_6638562	0/0	t0010	642	1	1	0	0	0	0	copy fasta	THAP3	chr1	6619868	6638562
THAP4_chr2_241579405_241642158	1/1	t0001	343	375	92	58	172	14	37	copy fasta	THAP4	chr2	241579405	241642158