JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THAP4_chr2_241579405_241642158	0/0	t0002	343	6	1	2	3	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	t0003	343	5	0	4	0	0	1	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	t0004	351	3	0	0	3	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP4_chr2_241579405_241642158	0/0	t0005	343	1	1	0	0	0	0	copy fasta	THAP4	chr2	241579405	241642158
THAP5_chr7_108557132_108574706	1/0	t0001	2197	84	9	16	38	4	16	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/1	t0002	2199	79	5	13	52	3	5	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0003	2173	67	27	14	15	0	11	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0004	2200	34	2	2	27	0	3	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0005	2198	33	6	11	12	1	3	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0006	2198	17	4	0	13	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0007	2196	16	0	1	15	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0008	2196	15	14	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0009	2197	11	10	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0010	2201	10	1	2	6	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0011	2199	7	1	2	3	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0012	2196	6	1	0	4	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0013	2197	5	0	2	2	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0014	2197	4	3	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0015	2197	4	4	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0016	2172	3	0	2	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0017	2199	3	0	0	3	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0018	2197	3	2	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0019	2198	3	3	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0020	2199	2	0	0	2	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0021	2197	2	0	0	2	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0022	2198	2	2	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0023	2199	2	0	0	2	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0024	2200	1	0	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0025	2173	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0026	2196	1	0	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0027	2186	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0028	2199	1	0	0	0	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0029	2200	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0030	2194	1	1	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0031	2173	1	0	1	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0032	2198	1	1	0	0	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0033	2198	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0034	2173	1	0	0	0	0	1	copy fasta	THAP5	chr7	108557132	108574706
THAP5_chr7_108557132_108574706	0/0	t0035	2200	1	0	0	1	0	0	copy fasta	THAP5	chr7	108557132	108574706
THAP6_chr4_75509473_75535026	0/0	t0001	2882	111	17	13	60	4	17	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	1/1	t0002	2881	105	2	21	59	5	16	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0003	2883	73	14	16	39	1	3	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0004	2883	56	17	8	30	1	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0005	2883	17	16	1	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0006	2882	7	6	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0007	2881	7	0	6	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0008	2881	6	6	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0009	2882	3	0	0	3	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0010	2883	3	3	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0011	2883	2	2	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026