JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THAP6_chr4_75509473_75535026	0/0	t0012	2881	2	2	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0013	2879	2	2	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0014	2881	2	0	2	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0015	2883	2	0	0	2	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0016	2882	2	2	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0017	2882	1	1	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0018	2882	1	0	0	0	0	1	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0019	2879	1	1	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0020	2881	1	0	1	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0021	2881	1	0	0	0	0	1	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0022	2882	1	1	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0023	2883	1	1	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0024	2882	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0025	2881	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0026	2882	1	0	0	0	1	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0027	2883	1	0	0	1	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP6_chr4_75509473_75535026	0/0	t0028	2883	1	1	0	0	0	0	copy fasta	THAP6	chr4	75509473	75535026
THAP7_chr22_20994104_21007118	1/1	t0001	984	357	74	70	161	10	40	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0002	984	48	8	7	26	5	2	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0003	984	15	15	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0004	984	3	0	1	0	1	1	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0005	984	2	0	2	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0006	984	1	0	0	1	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0007	984	1	0	1	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0008	984	1	0	0	0	1	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0009	984	1	0	1	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0010	984	1	0	0	0	1	0	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0011	984	1	0	0	0	0	1	copy fasta	THAP7	chr22	20994104	21007118
THAP7_chr22_20994104_21007118	0/0	t0012	984	1	1	0	0	0	0	copy fasta	THAP7	chr22	20994104	21007118
THAP8_chr19_36029984_36059285	1/1	t0001	525	305	62	66	126	10	39	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	t0002	522	125	22	8	78	8	9	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	t0003	524	8	8	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP8_chr19_36029984_36059285	0/0	t0004	525	2	2	0	0	0	0	copy fasta	THAP8	chr19	36029984	36059285
THAP9_chr4_82895735_82924969	0/0	t0001	1114	251	57	25	139	4	26	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	1/1	t0002	1114	127	19	35	53	3	15	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0003	1114	4	4	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0004	1114	2	2	0	0	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0005	1114	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0006	1114	1	0	0	1	0	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0007	1114	1	0	0	0	1	0	copy fasta	THAP9	chr4	82895735	82924969
THAP9_chr4_82895735_82924969	0/0	t0008	1114	1	0	0	0	0	1	copy fasta	THAP9	chr4	82895735	82924969
THBD_chr20_23040633_23054672	0/0	t0001	2313	107	32	14	53	1	7	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0002	2313	106	15	19	40	7	25	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	1/0	t0003	2313	86	26	25	27	3	4	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/1	t0004	2313	64	1	8	40	5	9	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0005	2313	24	0	6	17	0	1	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0006	2313	21	11	2	8	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0007	2313	19	1	0	18	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0008	2313	8	0	0	8	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0009	2313	5	0	3	0	0	2	copy fasta	THBD	chr20	23040633	23054672