JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THBD_chr20_23040633_23054672	0/0	t0010	2313	4	3	1	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0011	2313	4	0	0	4	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0012	2313	3	3	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0013	2313	3	0	3	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0014	2313	2	0	2	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0015	2313	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0016	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0017	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0018	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0019	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0020	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0021	2313	1	0	1	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0022	2313	1	1	0	0	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0023	2313	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0024	2313	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0025	2313	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBD_chr20_23040633_23054672	0/0	t0026	2313	1	0	0	1	0	0	copy fasta	THBD	chr20	23040633	23054672
THBS1_chr15_39576079_39604466	0/1	t0001	4277	119	18	22	56	10	12	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0002	4277	47	3	5	37	0	2	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0003	4276	28	0	4	21	0	3	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0004	4277	24	16	3	5	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0005	4277	22	7	6	0	4	5	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0006	4278	9	1	1	6	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0007	4278	8	8	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0008	4277	8	0	8	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0009	4278	7	2	1	4	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0010	4277	7	0	5	0	0	2	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0011	4276	7	2	1	3	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0012	4275	6	5	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0013	4277	5	5	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0014	4277	4	0	0	4	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0015	4277	4	0	0	4	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0016	4278	4	3	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0017	4276	3	3	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0018	4276	3	0	0	1	0	2	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0019	4277	3	0	0	2	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0020	4277	3	0	2	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0021	4276	2	2	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0022	4276	2	2	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0023	4277	2	2	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0024	4278	2	2	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0025	4277	2	2	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0026	4277	2	0	0	2	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	1/0	t0027	4277	2	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0028	4277	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0029	4277	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0030	4277	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0031	4277	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0032	4277	1	0	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0033	4278	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466