JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THBS1_chr15_39576079_39604466	0/0	t0034	4278	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0035	4278	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0036	4277	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0037	4277	1	1	0	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0038	4277	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0039	4276	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0040	4276	1	0	0	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0041	4278	1	0	1	0	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0042	4277	1	0	0	0	0	1	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0043	4277	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS1_chr15_39576079_39604466	0/0	t0044	4277	1	0	0	1	0	0	copy fasta	THBS1	chr15	39576079	39604466
THBS2_chr6_169210785_169258846	0/1	t0001	2183	119	19	19	69	0	11	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0002	2176	80	27	17	24	6	6	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0003	2183	57	14	15	17	3	8	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0004	2183	31	3	8	14	2	4	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0005	2183	20	4	6	7	2	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0006	2183	18	0	0	18	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0007	2183	8	8	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0008	2183	6	4	2	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0009	2183	6	5	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0010	2183	6	0	4	2	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	1/0	t0011	2183	5	0	3	0	1	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0012	2183	4	3	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0013	2172	4	0	1	0	0	3	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0014	2183	3	2	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0015	2183	3	3	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0016	2172	3	0	0	0	0	3	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0017	2176	2	0	0	0	0	2	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0018	2183	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0019	2183	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0020	2176	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0021	2176	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0022	2176	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0023	2180	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0024	2176	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0025	2176	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0026	2176	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0027	2183	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0028	2183	1	0	0	0	1	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0029	2183	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0030	2183	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0031	2183	1	0	0	0	0	1	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0032	2183	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0033	2183	1	0	0	1	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0034	2183	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0035	2183	1	1	0	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0036	2183	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0037	2183	1	0	0	0	1	0	copy fasta	THBS2	chr6	169210785	169258846
THBS2_chr6_169210785_169258846	0/0	t0038	2176	1	0	1	0	0	0	copy fasta	THBS2	chr6	169210785	169258846
THBS3_chr1_155190588_155212897	1/1	t0001	275	297	86	51	110	14	34	copy fasta	THBS3	chr1	155190588	155212897