JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THBS3_chr1_155190588_155212897	0/0	t0002	275	1	0	1	0	0	0	copy fasta	THBS3	chr1	155190588	155212897
THBS4_chr5_80030348_80088287	0/1	t0001	337	378	76	64	181	15	41	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	t0002	337	7	0	0	7	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	t0003	337	5	0	4	0	0	1	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	1/0	t0004	337	2	0	0	0	1	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	t0005	337	1	0	0	1	0	0	copy fasta	THBS4	chr5	80030348	80088287
THBS4_chr5_80030348_80088287	0/0	t0006	337	1	0	0	1	0	0	copy fasta	THBS4	chr5	80030348	80088287
THEGL_chr4_56525606_56608507	1/1	t0001	256	358	74	68	165	16	33	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	t0002	256	21	19	1	0	0	1	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	t0003	256	2	2	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	t0004	256	1	1	0	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	t0005	256	1	0	1	0	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEGL_chr4_56525606_56608507	0/0	t0006	256	1	0	0	1	0	0	copy fasta	THEGL	chr4	56525606	56608507
THEG_chr19_356747_381026	1/0	t0001	510	125	12	33	65	4	10	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/1	t0002	510	49	7	7	22	2	10	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0003	472	49	3	19	15	6	6	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0004	510	33	3	0	27	0	3	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0005	510	11	11	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0006	472	11	0	5	3	1	2	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0007	510	7	4	1	0	2	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0008	638	6	6	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0009	510	5	1	0	1	0	3	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0010	510	5	0	3	2	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0011	638	4	4	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0012	477	3	3	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0013	638	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0014	702	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0015	477	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0016	510	2	1	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0017	1022	2	0	1	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0018	958	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0019	574	2	0	0	2	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0020	510	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0021	472	2	2	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0022	510	2	1	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0023	510	2	1	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0024	574	2	0	0	2	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0025	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0026	894	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0027	510	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0028	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0029	894	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0030	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0031	472	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0032	510	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0033	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0034	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0035	510	1	0	0	0	1	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0036	702	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0037	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026