JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THEG_chr19_356747_381026	0/0	t0038	894	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0039	958	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0040	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0041	477	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0042	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0043	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0044	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0045	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0046	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0047	510	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0048	638	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0049	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0050	423	1	0	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0051	510	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0052	1022	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0053	1022	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0054	830	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0055	574	1	0	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0056	477	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0057	510	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0058	510	1	0	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0059	510	1	1	0	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0060	510	1	0	0	1	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0061	510	1	0	1	0	0	0	copy fasta	THEG	chr19	356747	381026
THEG_chr19_356747_381026	0/0	t0062	510	1	0	0	0	0	1	copy fasta	THEG	chr19	356747	381026
THEM4_chr1_151865866_151914511	0/0	t0001	4076	78	7	11	42	4	14	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0002	4075	68	0	16	39	5	8	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0003	4075	50	0	12	32	1	5	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	1/0	t0004	4076	42	11	7	19	3	1	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/1	t0005	4074	18	10	2	0	3	2	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0006	4076	13	13	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0007	4078	9	9	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0008	4076	7	0	0	7	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0009	4068	6	6	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0010	4075	5	4	1	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0011	4075	5	0	0	5	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0012	4075	4	4	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0013	4075	3	3	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0014	4077	3	3	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0015	4076	3	3	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0016	4074	3	0	2	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0017	4075	2	2	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0018	4076	2	0	0	2	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0019	4075	2	0	0	2	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0020	4076	2	0	0	1	0	1	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0021	4075	2	0	1	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0022	4076	2	0	0	2	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0023	4075	2	0	0	2	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0024	4075	2	0	1	0	0	1	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0025	4076	2	0	0	2	0	0	copy fasta	THEM4	chr1	151865866	151914511