JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THEM4_chr1_151865866_151914511	0/0	t0026	4077	2	0	1	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0027	4075	2	0	0	0	0	2	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0028	4075	2	2	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0029	4075	2	2	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0030	4075	2	0	1	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0031	4074	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0032	4076	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0033	4074	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0034	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0035	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0036	4078	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0037	4077	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0038	4076	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0039	4074	1	0	0	0	0	1	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0040	4068	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0041	4077	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0042	4074	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0043	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0044	4067	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0045	4076	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0046	4076	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0047	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0048	4076	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0049	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0050	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0051	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0052	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0053	4143	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0054	4076	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0055	4076	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0056	4077	1	1	0	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0057	4076	1	0	0	0	0	1	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0058	4076	1	0	1	0	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM4_chr1_151865866_151914511	0/0	t0059	4075	1	0	0	1	0	0	copy fasta	THEM4	chr1	151865866	151914511
THEM5_chr1_151842101_151858712	0/1	t0001	371	399	62	77	195	16	48	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	t0002	344	29	25	2	0	2	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	t0003	411	4	4	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	1/0	t0004	418	3	2	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	t0005	371	3	3	0	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	t0006	371	1	0	1	0	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM5_chr1_151842101_151858712	0/0	t0007	371	1	0	0	1	0	0	copy fasta	THEM5	chr1	151842101	151858712
THEM6_chr8_142722223_142741927	0/0	t0001	1613	129	27	31	47	8	16	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0002	1613	103	18	14	55	1	15	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0003	1613	93	6	30	45	6	6	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0004	1612	28	9	2	15	0	2	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0005	1613	18	2	0	16	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0006	1612	8	1	0	3	3	1	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0007	1613	7	7	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0008	1613	4	4	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0009	1613	4	4	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927