JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THEM6_chr8_142722223_142741927	1/0	t0010	1613	3	0	0	2	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0011	1613	2	2	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0012	1613	2	0	0	2	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0013	1613	2	2	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0014	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0015	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0016	1613	1	0	0	0	0	1	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0017	1613	1	0	0	0	0	1	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0018	1613	1	0	0	1	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0019	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0020	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/1	t0021	1613	1	0	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0022	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0023	1613	1	1	0	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEM6_chr8_142722223_142741927	0/0	t0024	1613	1	0	1	0	0	0	copy fasta	THEM6	chr8	142722223	142741927
THEMIS2_chr1_27867544_27891675	1/1	t0001	782	195	28	50	82	7	26	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0002	781	133	41	17	54	9	12	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0003	781	53	4	9	28	2	10	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0004	781	15	12	3	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0005	781	3	2	1	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0006	781	2	1	1	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0007	781	2	2	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0008	781	2	2	0	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS2_chr1_27867544_27891675	0/0	t0009	781	1	0	1	0	0	0	copy fasta	THEMIS2	chr1	27867544	27891675
THEMIS_chr6_127703200_127906058	0/0	t0001	1912	174	54	36	62	7	15	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/1	t0002	1912	32	1	16	0	5	9	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	t0003	1912	12	11	1	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	t0004	1912	2	2	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	t0005	1912	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	t0006	1912	1	1	0	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THEMIS_chr6_127703200_127906058	0/0	t0007	1912	1	0	1	0	0	0	copy fasta	THEMIS	chr6	127703200	127906058
THG1L_chr5_157726420_157746449	1/1	t0001	1989	164	39	39	64	3	17	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0002	1990	149	26	27	75	8	13	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0003	1989	45	1	5	33	0	6	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0004	1990	13	0	1	7	0	5	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0005	1990	11	1	2	0	4	4	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0006	1991	7	2	1	3	1	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0007	1989	6	3	3	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0008	1990	5	2	0	3	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0009	1989	5	0	0	5	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0010	1989	4	4	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0011	1991	4	3	1	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0012	1991	4	4	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0013	1991	3	2	1	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0014	1990	3	3	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0015	1990	2	0	2	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0016	1989	2	0	0	2	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0017	1990	2	0	0	2	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0018	1990	2	2	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0019	1989	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449