JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THG1L_chr5_157726420_157746449	0/0	t0020	1989	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0021	1990	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0022	1990	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0023	1989	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0024	1991	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0025	1989	1	0	1	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0026	1989	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0027	1990	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0028	1989	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0029	1990	1	1	0	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0030	1990	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0031	1989	1	0	1	0	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0032	1990	1	0	0	1	0	0	copy fasta	THG1L	chr5	157726420	157746449
THG1L_chr5_157726420_157746449	0/0	t0033	1990	1	0	0	0	0	1	copy fasta	THG1L	chr5	157726420	157746449
THNSL1_chr10_25011612_25031664	1/1	t0001	1506	239	64	39	91	13	30	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0002	1506	131	8	23	81	3	16	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0003	1506	9	9	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0004	1506	7	5	2	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0005	1506	5	4	1	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0006	1506	4	4	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0007	1506	3	0	3	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0008	1506	3	3	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0009	1506	3	0	0	3	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0010	1506	2	0	0	2	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0011	1506	1	0	0	0	0	1	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0012	1506	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0013	1506	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0014	1506	1	1	0	0	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0015	1506	1	0	0	0	0	1	copy fasta	THNSL1	chr10	25011612	25031664
THNSL1_chr10_25011612_25031664	0/0	t0016	1506	1	0	0	1	0	0	copy fasta	THNSL1	chr10	25011612	25031664
THNSL2_chr2_88165346_88191627	1/0	t0001	628	16	1	8	2	2	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0002	615	11	1	3	0	5	2	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0003	614	10	0	7	2	0	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0004	629	4	1	1	2	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0005	636	4	0	1	3	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0006	649	2	0	1	0	1	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0007	663	1	0	0	0	0	1	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0008	621	1	0	0	1	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0009	622	1	0	0	0	1	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0010	657	1	1	0	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0011	622	1	0	1	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/0	t0012	636	1	0	0	0	1	0	copy fasta	THNSL2	chr2	88165346	88191627
THNSL2_chr2_88165346_88191627	0/1	t0013	650	1	0	0	0	0	0	copy fasta	THNSL2	chr2	88165346	88191627
THOC1_chr18_209520_273047	1/1	t0001	135	359	94	61	156	11	35	copy fasta	THOC1	chr18	209520	273047
THOC1_chr18_209520_273047	0/0	t0002	138	17	0	7	0	3	7	copy fasta	THOC1	chr18	209520	273047
THOC2_chrX_123595569_123738052	1/1	t0001	819	251	70	47	95	11	26	copy fasta	THOC2	chrX	123595569	123738052
THOC3_chr5_175954531_175973315	0/0	t0001	546	156	35	36	68	8	9	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	1/0	t0002	546	57	11	11	31	0	3	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	t0003	546	39	8	5	22	2	2	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	t0004	546	2	0	2	0	0	0	copy fasta	THOC3	chr5	175954531	175973315