JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THOC3_chr5_175954531_175973315	0/0	t0005	546	2	0	0	2	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	t0006	546	1	1	0	0	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	t0007	546	1	1	0	0	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC3_chr5_175954531_175973315	0/0	t0008	546	1	0	0	1	0	0	copy fasta	THOC3	chr5	175954531	175973315
THOC5_chr22_29500879_29558757	1/0	t0001	2677	175	39	29	92	5	9	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/1	t0002	2677	53	1	15	15	6	15	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0003	2677	45	9	9	18	1	8	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0004	2673	27	1	0	21	0	5	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0005	2677	12	12	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0006	2677	12	1	6	0	3	2	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0007	2677	8	7	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0008	2677	8	0	0	8	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0009	2673	6	6	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0010	2673	5	1	0	2	0	2	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0011	2673	4	3	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0012	2677	4	4	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0013	2677	3	3	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0014	2677	3	0	0	3	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0015	2677	3	0	2	0	1	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0016	2677	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0017	2677	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0018	2677	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0019	2677	1	0	0	0	0	1	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0020	2677	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0021	2677	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0022	2677	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0023	2673	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0024	2673	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0025	2677	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0026	2673	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0027	2677	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0028	2677	1	1	0	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0029	2677	1	0	0	1	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0030	2677	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC5_chr22_29500879_29558757	0/0	t0031	2677	1	0	1	0	0	0	copy fasta	THOC5	chr22	29500879	29558757
THOC6_chr16_3019035_3032750	1/1	t0001	386	184	34	29	95	6	18	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	t0002	385	122	44	14	44	8	12	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	t0003	384	80	9	26	29	2	14	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	t0004	385	8	7	1	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	t0005	376	1	0	1	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC6_chr16_3019035_3032750	0/0	t0006	384	1	0	1	0	0	0	copy fasta	THOC6	chr16	3019035	3032750
THOC7_chr3_63828870_63868805	1/1	t0001	278	355	83	56	166	13	35	copy fasta	THOC7	chr3	63828870	63868805
THOC7_chr3_63828870_63868805	0/0	t0002	284	11	1	5	2	1	2	copy fasta	THOC7	chr3	63828870	63868805
THOC7_chr3_63828870_63868805	0/0	t0003	270	6	5	0	0	0	1	copy fasta	THOC7	chr3	63828870	63868805
THOC7_chr3_63828870_63868805	0/0	t0004	293	1	0	1	0	0	0	copy fasta	THOC7	chr3	63828870	63868805
THOC7_chr3_63828870_63868805	0/0	t0005	278	1	1	0	0	0	0	copy fasta	THOC7	chr3	63828870	63868805
THOP1_chr19_2780503_2820807	1/1	t0001	2692	125	16	37	45	13	12	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0002	2692	113	18	14	60	3	18	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0003	2692	52	8	1	36	0	7	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0004	2693	10	8	1	1	0	0	copy fasta	THOP1	chr19	2780503	2820807