JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THOP1_chr19_2780503_2820807	0/0	t0005	2692	9	9	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0006	2693	7	7	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0007	2693	7	0	1	5	0	1	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0008	2693	6	6	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0009	2693	6	1	2	2	0	1	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0010	2692	3	3	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0011	2693	3	3	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0012	2693	2	0	0	2	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0013	2692	2	2	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0014	2692	2	1	0	0	1	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0015	2692	2	0	0	0	0	2	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0016	2692	2	0	0	1	1	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0017	2693	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0018	2693	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0019	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0020	2692	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0021	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0022	2693	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0023	2692	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0024	2692	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0025	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0026	2692	1	0	1	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0027	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0028	2693	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0029	2693	1	0	0	1	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0030	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0031	2692	1	0	1	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0032	2693	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0033	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0034	2692	1	1	0	0	0	0	copy fasta	THOP1	chr19	2780503	2820807
THOP1_chr19_2780503_2820807	0/0	t0035	2692	1	0	0	0	0	1	copy fasta	THOP1	chr19	2780503	2820807
THPO_chr3_184366935_184383207	0/0	t0001	857	142	46	42	35	5	14	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	1/0	t0002	857	116	3	18	76	7	11	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0003	857	66	32	9	17	2	6	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/1	t0004	857	41	0	7	29	2	2	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0005	857	27	4	2	19	0	2	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0006	857	12	9	2	0	0	1	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0007	857	11	2	0	9	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0008	857	8	0	3	2	0	3	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0009	857	5	0	1	0	0	4	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0010	857	4	0	2	2	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0011	857	1	0	0	0	0	1	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0012	857	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0013	857	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THPO_chr3_184366935_184383207	0/0	t0014	857	1	0	0	1	0	0	copy fasta	THPO	chr3	184366935	184383207
THRAP3_chr1_36219443_36310357	0/0	t0001	1538	158	48	35	45	6	24	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0002	1539	24	11	5	7	0	1	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/1	t0003	1536	14	0	5	1	2	5	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	1/0	t0004	1538	12	11	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0005	1537	11	3	1	7	0	0	copy fasta	THRAP3	chr1	36219443	36310357