JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THRAP3_chr1_36219443_36310357	0/0	t0006	1538	6	6	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0007	1540	5	4	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0008	1539	4	3	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0009	1538	4	0	2	2	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0010	1538	4	0	2	0	1	1	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0011	1538	3	1	1	0	1	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0012	1538	1	1	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0013	1537	1	0	0	1	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0014	1538	1	1	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0015	1538	1	0	0	1	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0016	1539	1	1	0	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0017	1540	1	0	1	0	0	0	copy fasta	THRAP3	chr1	36219443	36310357
THRAP3_chr1_36219443_36310357	0/0	t0018	1538	1	0	0	0	0	1	copy fasta	THRAP3	chr1	36219443	36310357
THRA_chr17_40057965_40098002	1/0	t0001	3972	66	13	11	32	1	8	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0002	3978	49	1	13	28	1	6	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/1	t0003	3970	44	2	13	13	5	10	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0004	3980	30	7	3	18	0	2	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0005	3974	16	0	6	7	2	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0006	3962	12	8	2	0	0	2	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0007	3974	9	5	3	0	0	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0008	3972	9	1	1	3	0	4	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0009	3976	8	0	5	1	1	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0010	3982	8	3	0	5	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0011	3976	8	1	0	5	0	2	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0012	3970	7	0	0	7	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0013	3984	7	4	0	2	1	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0014	3972	6	0	1	0	2	3	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0015	3962	5	5	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0016	3970	5	2	1	1	1	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0017	3974	5	4	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0018	3958	4	4	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0019	3962	3	3	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0020	3972	3	0	1	2	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0021	3970	3	3	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0022	3969	3	2	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0023	3974	2	1	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0024	3982	2	2	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0025	3972	2	0	2	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0026	3968	2	0	0	2	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0027	3970	2	2	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0028	3972	2	2	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0029	3968	2	2	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0030	3970	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0031	3964	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0032	3961	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0033	3961	1	0	0	0	0	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0034	3972	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0035	3972	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0036	3972	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0037	3980	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002