JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THRA_chr17_40057965_40098002	0/0	t0038	3978	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0039	3984	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0040	3976	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0041	3976	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0042	3982	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0043	3972	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0044	3972	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0045	3972	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0046	3970	1	0	0	0	0	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0047	3956	1	0	0	0	0	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0048	3972	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0049	3969	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0050	3970	1	0	0	0	0	1	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0051	3970	1	0	1	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0052	3970	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0053	3988	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0054	3986	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0055	3980	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0056	3978	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0057	3978	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0058	3976	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0059	3974	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0060	3970	1	0	0	1	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0061	3972	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0062	3968	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRA_chr17_40057965_40098002	0/0	t0063	3974	1	1	0	0	0	0	copy fasta	THRA	chr17	40057965	40098002
THRB_chr3_24112153_24499850	0/0	t0001	6191	23	4	10	6	0	3	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/1	t0002	6191	21	1	5	10	3	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0003	6184	17	6	6	3	1	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0004	6186	9	7	0	1	0	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0005	6190	8	1	3	1	1	2	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0006	6185	7	3	1	3	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0007	6184	7	6	1	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0008	6192	6	0	2	1	1	2	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	1/0	t0009	6191	6	2	2	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0010	6192	6	0	4	2	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0011	6190	5	1	0	3	0	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0012	6192	4	3	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0013	6184	4	4	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0014	6184	3	3	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0015	6185	3	3	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0016	6185	3	0	2	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0017	6191	2	0	0	2	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0018	6186	2	2	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0019	6185	2	2	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0020	6185	2	2	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0021	6185	2	2	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0022	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0023	6196	1	0	0	0	0	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0024	6192	1	0	0	0	0	1	copy fasta	THRB	chr3	24112153	24499850