JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THRB_chr3_24112153_24499850	0/0	t0025	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0026	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0027	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0028	6191	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0029	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0030	6180	1	0	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0031	6176	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0032	6185	1	0	0	0	0	1	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0033	6191	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0034	6192	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0035	6189	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0036	6188	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0037	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0038	6191	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0039	6187	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0040	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0041	6187	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0042	6190	1	0	1	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0043	6190	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0044	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0045	6191	1	0	1	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0046	6187	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0047	6192	1	0	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0048	6192	1	0	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0049	6191	1	0	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0050	6191	1	0	0	1	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0051	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0052	6186	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0053	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0054	4952	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0055	6191	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0056	6185	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRB_chr3_24112153_24499850	0/0	t0057	6184	1	1	0	0	0	0	copy fasta	THRB	chr3	24112153	24499850
THRSP_chr11_78058861_78073351	1/1	t0001	734	272	45	47	129	14	35	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0002	734	91	5	21	57	1	7	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0003	734	27	27	0	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0004	733	13	12	0	1	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0005	734	2	2	0	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0006	734	1	0	0	1	0	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0007	734	1	0	0	0	1	0	copy fasta	THRSP	chr11	78058861	78073351
THRSP_chr11_78058861_78073351	0/0	t0008	734	1	1	0	0	0	0	copy fasta	THRSP	chr11	78058861	78073351
THSD1_chr13_52372167_52411172	1/1	t0001	468	297	63	56	133	10	33	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	t0002	468	8	6	1	0	0	1	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	t0003	468	7	0	1	4	0	2	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	t0004	468	2	2	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	t0005	468	1	1	0	0	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD1_chr13_52372167_52411172	0/0	t0006	468	1	0	0	1	0	0	copy fasta	THSD1	chr13	52372167	52411172
THSD4_chr15_71110471_71788383	0/0	t0001	6320	16	4	7	0	1	4	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0002	6319	12	7	3	1	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0003	6319	9	6	3	0	0	0	copy fasta	THSD4	chr15	71110471	71788383