JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THSD4_chr15_71110471_71788383	0/0	t0004	6317	8	7	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0005	6319	6	6	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0006	6319	6	0	1	3	1	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0007	6319	5	3	0	0	0	2	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0008	6319	4	4	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0009	6320	4	0	0	1	0	3	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0010	6320	3	1	1	0	1	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0011	6319	3	0	3	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0012	6316	3	3	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0013	6320	2	1	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0014	6318	2	0	0	1	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0015	6317	2	0	0	1	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0016	6319	2	2	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0017	6320	2	1	0	0	1	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0018	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0019	6318	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0020	6320	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0021	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0022	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0023	6318	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0024	6319	1	0	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0025	6319	1	0	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0026	6319	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0027	6317	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0028	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0029	6319	1	0	0	1	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0030	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0031	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0032	6320	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0033	6317	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0034	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0035	6320	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0036	6319	1	0	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0037	6319	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0038	6319	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0039	6320	1	0	0	0	0	1	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0040	6319	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0041	6316	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0042	6316	1	1	0	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0043	6319	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD4_chr15_71110471_71788383	0/0	t0044	6319	1	0	1	0	0	0	copy fasta	THSD4	chr15	71110471	71788383
THSD7A_chr7_11365365_11837198	1/0	t0001	5682	30	5	3	20	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0002	5687	20	6	4	8	1	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0003	5691	18	5	7	5	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0004	5682	8	0	0	8	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0005	5691	7	0	0	7	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0006	5682	6	6	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0007	5686	5	2	1	2	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0008	5687	5	1	2	0	0	2	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0009	5687	4	2	2	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198