JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THSD7A_chr7_11365365_11837198	0/0	t0010	5691	4	0	1	1	1	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0011	5687	3	0	2	0	1	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0012	5682	3	3	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0013	5691	3	3	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0014	5687	3	3	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0015	5688	3	1	1	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0016	5683	3	0	0	3	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0017	5682	3	0	3	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0018	5682	3	0	0	2	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0019	5692	2	2	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0020	5681	2	0	0	2	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0021	5689	2	2	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0022	5686	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0023	5687	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0024	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0025	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0026	5682	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0027	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0028	5695	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0029	5696	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0030	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0031	5687	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0032	5686	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0033	5692	1	0	0	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0034	5691	1	0	0	0	1	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0035	5690	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/1	t0036	5691	1	0	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0037	5688	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0038	5692	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0039	5689	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0040	5687	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0041	5688	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0042	5687	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0043	5686	1	0	0	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0044	5683	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0045	5687	1	0	0	0	0	1	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0046	5683	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0047	5682	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0048	5682	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0049	5683	1	0	0	1	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0050	5695	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0051	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0052	5690	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0053	5684	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0054	5684	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0055	5691	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0056	5687	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0057	5686	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0058	5682	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0059	5690	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198