JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THSD7A_chr7_11365365_11837198	0/0	t0060	5682	1	1	0	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0061	5691	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0062	5690	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0063	5688	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7A_chr7_11365365_11837198	0/0	t0064	5686	1	0	1	0	0	0	copy fasta	THSD7A	chr7	11365365	11837198
THSD7B_chr2_136760545_137682718	0/0	t0001	1292	31	16	2	9	1	3	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	1/1	t0002	1292	17	13	1	0	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0003	1292	9	3	1	5	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0004	1292	8	6	1	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0005	1292	6	6	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0006	1292	4	0	0	3	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0007	1290	4	4	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0008	1292	4	1	2	0	0	1	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0009	1292	3	0	2	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0010	1292	3	0	2	0	1	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0011	1292	2	2	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0012	1292	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0013	1292	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0014	1292	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0015	1292	1	0	1	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0016	1290	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0017	1292	1	0	0	1	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD7B_chr2_136760545_137682718	0/0	t0018	1292	1	1	0	0	0	0	copy fasta	THSD7B	chr2	136760545	137682718
THSD8_chr19_12797069_12809389	1/1	t0001	90	415	94	70	192	17	40	copy fasta	THSD8	chr19	12797069	12809389
THSD8_chr19_12797069_12809389	0/0	t0002	90	5	0	2	0	1	2	copy fasta	THSD8	chr19	12797069	12809389
THTPA_chr14_23551271_23565271	1/1	t0001	1919	324	41	65	162	16	38	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0002	1920	13	13	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0003	1919	12	11	1	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0004	1919	11	0	0	11	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0005	1919	10	9	0	0	0	1	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0006	1919	7	7	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0007	1919	7	7	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0008	1919	6	6	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0009	1919	4	3	1	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0010	1919	3	0	0	2	0	1	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0011	1919	2	2	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0012	1920	1	1	0	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0013	1919	1	0	0	1	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0014	1919	1	0	0	1	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0015	1919	1	0	0	1	0	0	copy fasta	THTPA	chr14	23551271	23565271
THTPA_chr14_23551271_23565271	0/0	t0016	1919	1	0	1	0	0	0	copy fasta	THTPA	chr14	23551271	23565271
THUMPD1_chr16_20728664_20746818	0/0	t0001	3296	162	30	28	88	6	10	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0002	3296	63	8	14	27	3	11	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0003	3290	43	1	3	34	1	4	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0004	3298	19	9	2	8	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0005	3296	18	1	11	0	4	2	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0006	3297	15	0	2	8	0	5	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0007	3296	12	0	0	12	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0008	3295	11	11	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0009	3291	10	4	1	0	0	5	copy fasta	THUMPD1	chr16	20728664	20746818