JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
THUMPD1_chr16_20728664_20746818	0/0	t0010	3294	7	7	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0011	3297	6	3	0	2	0	1	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0012	3297	5	3	0	2	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0013	3295	4	4	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0014	3295	2	2	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/1	t0015	3296	2	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0016	3290	2	2	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0017	3297	2	1	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0018	3297	2	0	0	0	0	2	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0019	3297	2	0	1	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0020	3297	2	0	0	2	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	1/0	t0021	3296	1	0	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0022	3296	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0023	3296	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0024	3296	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0025	3296	1	0	0	0	0	1	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0026	3295	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0027	3295	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0028	3295	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0029	3294	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0030	3295	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0031	3296	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0032	3296	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0033	3297	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0034	3297	1	0	0	0	0	1	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0035	3296	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0036	3296	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0037	3296	1	0	1	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0038	3296	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0039	3299	1	1	0	0	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0040	3297	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD1_chr16_20728664_20746818	0/0	t0041	3298	1	0	0	1	0	0	copy fasta	THUMPD1	chr16	20728664	20746818
THUMPD2_chr2_39731061_39784258	0/0	t0001	694	209	53	30	99	7	20	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	1/1	t0002	694	97	15	25	35	5	15	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0003	694	13	13	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0004	694	6	6	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0005	676	4	3	1	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0006	694	3	0	2	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0007	694	2	2	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0008	694	1	1	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0009	694	1	0	0	0	0	1	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0010	694	1	0	0	1	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD2_chr2_39731061_39784258	0/0	t0011	694	1	1	0	0	0	0	copy fasta	THUMPD2	chr2	39731061	39784258
THUMPD3_chr3_9358054_9391791	0/1	t0001	2231	135	20	28	68	4	14	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0002	2231	66	0	3	60	0	3	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	1/0	t0003	2231	46	30	5	7	0	3	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0004	2231	31	1	11	14	0	5	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0005	2231	15	2	4	0	4	5	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0006	2231	13	11	2	0	0	0	copy fasta	THUMPD3	chr3	9358054	9391791
THUMPD3_chr3_9358054_9391791	0/0	t0007	2231	10	0	6	0	1	3	copy fasta	THUMPD3	chr3	9358054	9391791