Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BRD4_chr19_15230519_15337539	0/0	t0068	3144	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0069	3144	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0070	3144	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0071	3146	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0072	3146	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0073	3147	1	0	0	1	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0074	3147	1	0	1	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0075	3136	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD4_chr19_15230519_15337539	0/0	t0076	3126	1	1	0	0	0	0	copy fasta	BRD4	chr19	15230519	15337539
BRD7_chr16_50310957_50373988	0/0	t0001	3473	90	21	8	53	1	7	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/1	t0002	3468	84	13	6	59	3	2	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0003	3469	70	2	21	31	5	11	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0004	3473	32	12	9	3	2	6	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0005	3473	28	1	12	9	1	5	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0006	3469	19	1	12	0	2	4	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0007	3477	9	6	1	2	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0008	3477	5	5	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0009	3473	4	4	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0010	3465	4	4	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0011	3477	4	0	0	4	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0012	3469	4	0	4	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0013	3473	4	4	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	1/0	t0014	3469	4	0	0	3	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0015	3470	3	3	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0016	3470	3	3	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0017	3468	3	0	2	0	1	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0018	3464	3	1	0	2	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0019	3468	3	0	0	2	0	1	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0020	3469	2	0	1	0	0	1	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0021	3473	2	2	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0022	3473	2	0	0	2	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0023	3473	2	2	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0024	3455	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0025	3469	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0026	3473	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0027	3473	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0028	3457	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0029	3473	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0030	3465	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0031	3469	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0032	3470	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0033	3473	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0034	3464	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0035	3468	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0036	3468	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0037	3468	1	0	0	0	0	1	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0038	3472	1	1	0	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0039	3468	1	0	0	1	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0040	3468	1	0	1	0	0	0	copy fasta	BRD7	chr16	50310957	50373988
BRD7_chr16_50310957_50373988	0/0	t0041	3469	1	0	0	0	1	0	copy fasta	BRD7	chr16	50310957	50373988