JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIA1_chr2_70204444_70253628	0/0	t0012	3474	2	2	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0013	3474	2	1	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0014	3474	1	0	0	0	0	1	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0015	3475	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0016	3476	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0017	3474	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0018	3475	1	1	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0019	3474	1	1	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0020	3473	1	1	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0021	3474	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0022	3474	1	1	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0023	3474	1	0	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0024	3474	1	1	0	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0025	3474	1	0	0	1	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIA1_chr2_70204444_70253628	0/0	t0026	3474	1	0	1	0	0	0	copy fasta	TIA1	chr2	70204444	70253628
TIAL1_chr10_119568465_119601964	0/0	t0001	2701	120	26	10	65	4	15	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/1	t0002	2701	79	6	26	25	6	15	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0003	2702	56	22	9	18	1	6	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	1/0	t0004	2700	45	8	13	21	0	2	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0005	2702	25	3	1	17	0	4	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0006	2703	10	4	0	5	1	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0007	2702	9	0	0	9	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0008	2702	6	6	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0009	2700	4	1	0	3	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0010	2700	4	4	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0011	2703	4	0	1	3	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0012	2701	3	0	0	3	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0013	2701	3	2	0	0	0	1	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0014	2702	2	0	0	2	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0015	2702	2	0	0	2	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0016	2700	2	2	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0017	2700	2	1	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0018	2701	2	0	0	2	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0019	2700	2	0	0	2	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0020	2702	2	0	0	2	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0021	2700	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0022	2701	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0023	2701	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0024	2703	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0025	2702	1	0	0	0	0	1	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0026	2701	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0027	2700	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0028	2701	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0029	2701	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0030	2701	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0031	2702	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0032	2703	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0033	2703	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0034	2702	1	1	0	0	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAL1_chr10_119568465_119601964	0/0	t0035	2700	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964