JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIAL1_chr10_119568465_119601964	0/0	t0036	2700	1	0	0	1	0	0	copy fasta	TIAL1	chr10	119568465	119601964
TIAM1_chr21_31113418_31349261	0/0	t0001	2443	42	16	6	9	1	10	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0002	2445	40	8	9	15	2	6	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0003	2445	24	3	10	8	0	3	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0004	2445	18	14	2	2	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	1/1	t0005	2443	12	0	4	4	0	2	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0006	2445	10	10	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0007	2442	9	0	3	1	0	5	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0008	2444	9	3	0	5	0	1	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0009	2445	7	6	1	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0010	2444	6	1	3	0	0	2	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0011	2445	4	2	0	2	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0012	2444	4	4	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0013	2444	3	1	0	0	0	2	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0014	2445	2	2	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0015	2445	2	0	0	2	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0016	2444	2	2	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0017	2444	2	2	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0018	2443	1	0	0	0	1	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0019	2444	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0020	2444	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0021	2445	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0022	2443	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0023	2444	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0024	2445	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0025	2444	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0026	2443	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0027	2443	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0028	2443	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0029	2445	1	0	0	1	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0030	2445	1	0	0	0	0	1	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0031	2445	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0032	2445	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM1_chr21_31113418_31349261	0/0	t0033	2442	1	1	0	0	0	0	copy fasta	TIAM1	chr21	31113418	31349261
TIAM2_chr6_154990315_155262723	0/0	t0001	983	72	7	20	34	1	10	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	1/1	t0002	989	20	8	5	1	2	2	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0003	986	18	1	3	9	0	5	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0004	985	17	0	8	7	2	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0005	983	14	11	2	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0006	985	12	9	3	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0007	985	8	4	3	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0008	986	8	7	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0009	986	7	0	0	4	0	3	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0010	985	7	4	3	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0011	990	5	0	3	0	0	2	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0012	986	4	4	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0013	985	4	3	0	0	1	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0014	984	3	2	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0015	984	3	1	0	1	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0016	989	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723