JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
TIAM2_chr6_154990315_155262723	0/0	t0017	985	2	1	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0018	986	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0019	984	2	2	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0020	985	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0021	989	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0022	986	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0023	983	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0024	984	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0025	985	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0026	983	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0027	989	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0028	985	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0029	986	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0030	985	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0031	983	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0032	983	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0033	989	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0034	987	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0035	988	1	0	0	0	0	1	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0036	985	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0037	985	1	0	1	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0038	985	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TIAM2_chr6_154990315_155262723	0/0	t0039	985	1	1	0	0	0	0	copy fasta	TIAM2	chr6	154990315	155262723
TICAM1_chr19_4810932_4836712	1/0	t0001	546	165	43	32	63	3	23	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0002	546	149	23	25	79	7	15	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/1	t0003	546	57	25	11	11	3	6	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0004	546	25	0	8	12	3	2	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0005	546	5	5	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0006	546	2	0	0	2	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0007	546	2	2	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0008	546	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0009	546	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0010	546	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0011	546	1	0	0	1	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0012	546	1	0	0	0	0	1	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0013	546	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM1_chr19_4810932_4836712	0/0	t0014	546	1	1	0	0	0	0	copy fasta	TICAM1	chr19	4810932	4836712
TICAM2_chr5_115573496_115607479	0/0	t0001	2497	134	18	28	69	6	13	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	1/1	t0002	2496	118	15	24	58	6	13	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0003	2496	60	7	4	39	2	8	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0004	2496	16	2	1	9	0	4	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0005	2497	11	7	1	1	0	2	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0006	2496	9	7	2	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0007	2496	7	6	0	0	0	1	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0008	2496	5	4	1	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0009	2496	4	4	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0010	2496	4	4	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0011	2496	4	4	0	0	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0012	2496	3	2	0	1	0	0	copy fasta	TICAM2	chr5	115573496	115607479
TICAM2_chr5_115573496_115607479	0/0	t0013	2496	3	0	0	0	0	3	copy fasta	TICAM2	chr5	115573496	115607479